Chrysalis is a post-apocalyptic horror film, set 25 years after a biological terrorist attack unleashes a virus upon the world, transforming much of humanity into vicious creatures and laying waste to civilization. The remnants and survivors have staggered about for years, as the "infected" slowly starve and die off. Our story follows Joshua (Cole Simon) and Penelope (Sara Gorsky), two such survivors who have banded together in the hope of rescuing others and hopefully rebuilding civilization. When they encounter Abira, the lone survivor of another group, their worlds and goals are irrevocably altered, and they must face new and terrifying challenges if they are to survive.

Berkeley record store clerk Nick Brady (Jonathan Scarfe) begins to experience strange visions from an entity he calls VALIS that cause him to uproot his family and move to Los Angeles where he becomes a successful music company executive. With the help of best friend, science-fiction writer Philip K. Dick himself (Shea Whigam) and a mysterious woman named Silvia (Alanis Morissette), Nick finds himself drawn into a dangerous political-mystical conspiracy of cosmic proportions. The story is set in an alternate reality America circa 1985 under the authoritarian control of President Fremont, a Nixon-like clone (Scott Wilson).

In the distant future, an immortal bionic leader, the product of genetic engineering, has ruled over the universe for 200 years. An uprising is being staged by those preserving natural birth.

Mankind must fight to survive as Earth is invaded by hostile UFOs bent on destroying the planet. As the epic battle wages on, astronauts sneak aboard the mothership where they discover a portal to the aliens' home world. They manage to alert Earth before they are brutally murdered. Left with no other choice, Earth sends an elite military team of science and combat specialists through the portal where they attempt to stop the invasion from the inside out. But is the battle already lost for humanity?