Maverick Ranger Scott, known for ruthless, unorthodox methods but good results, is called in to help the secret service after Washington big whig's brat daughter is abducted while studying at Harvard. Scott quickly realizes the protection detail's prime suspect, her boyfriend Michael Blake, is innocent and dumped her for being a drug-addicted slut. Next he traces her to a bordello, only to realize the captors didn't realize who she is but simply recruited her for the Middle Eastern white slavery market, and are likely to dispose of her rather then confront her father. But instead of the support expected in such high-profile case, Scott gets orders to work in secret before the press catches on, and even finds his quest sabotaged.

In 1939, an intrepid reporter in New York City makes a connection between the story she's covering-- of famous scientists suddenly disappearing around the world, and a recent attack on the city by giant robots. Determined to find the solution to these happenings, she seeks the help of her ex-boyfriend, the captain of a mercenary legion of pilots. The two are investigating the case when the robots attack the city again, though in a stroke of luck, Sky Captain's right hand man is able to locate their source. They then set off on an adventure in search of the evil mastermind behind these schemes, who is bent on creating a utopia and destroying the current world.

Famed mystery writer, Mort Rainey (Depp) is confronted by a mysterious stranger outside his house. This stranger calls himself John Shooter (Turturro) and claims that Mort has stolen an idea for a story from him. Mort says he can prove he wrote his first, but whilst Mort waits for the evidence to appear, Shooter starts to become more and more violent.

When Mystery, Inc. are guests of honor at the grand opening of the Coolsville Museum of Criminology...

Brian Lackey is determined to discover what happened during an amnesia blackout when he was eight years old, and then later woke with a bloody nose. He believes he was abducted by aliens, and N. McCormick, a fellow player on Brian's childhood baseball team, may be the key as to exactly what happened that night. As Brian searches for the truth and tries to track him down, Neil McCormick takes up hustling and moves to New York, in attempts to forget childhood memories that haunt him. Together, the two of them uncover the terrible truth of the scars they share.